Yes its a funny quirk of CFS3 that it will find dds files ANYWHERE within the install - another common area of duplication is between the Shared folder under the Aircraft folder, and sundry cockpit, weapons dds found either in individual aircraft folders, or in the Weapons, Pylons or other folders. I find that things like guages sharing the same name may be quite different. Trouble is, CFS3 will use them at random if named the same.
In my more paranoid moments I also remove renamed xml files (eg. sound_backup.xml) and create a new Backup Folder
outside the root cfs3 folder...
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